Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10006798 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10006798 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11775
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11775

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (61.90%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F003962	Metagenome / Metatranscriptome	459	Y
F011208	Metagenome	293	N
F011649	Metagenome	288	Y
F014827	Metagenome / Metatranscriptome	259	Y
F019450	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000679811	F011649	N/A	MDENGAAPSAIEKAKNGRDIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLNVTQDVTHGLSSNLASLLAGIAGRKKTQVIDAKAVEVKPVLPIRDNSYCATDATQTIVTTTPKVLGKTRHRRMKTRKPRAESLARYTTTPPANPPAPI
Ga0214917_1000679815	F019450	GGAGG	MANIRYHYAVYNSIGQFQARFLTWRSALRWAIREGMEWTAVIRKEVQS
Ga0214917_1000679818	F011208	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWKKWRTENGRPATKR
Ga0214917_1000679819	F003962	AGAAGG	LNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPSVWDTDEVDE
Ga0214917_100067983	F001459	N/A	MIRLLRSLKFFVRNYEWVNEPKWEDEDEKVWTGFLATPTGRKLSLILLNLTLRQNASAVMKKPEELADACGHARGYRACVATLESLASQKLNSAIPGYGDGSDETIAD
Ga0214917_100067988	F014827	N/A	VLRAILEIIAAVFRIIPSWKEKRTQNLEGDWRKNREAIERDLRSESWWLRNNDTSNPHNGNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10006798

Overview

Ecosystem & Geography

Associated Families

Sequences