Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10006754 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10006754 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11817
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11817

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (79.17%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002622	Metagenome / Metatranscriptome	542	Y
F074876	Metagenome / Metatranscriptome	119	Y
F078287	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000675420	F000473	AGGAG	VSSSHFYDDKHFKYGINQWTGEPNKPVFYNEEMKKKIRELKKPGMLIMDIAMYPDFLAIRLYEDNFLQFDGIKKEQVIAYVDKVKKVIESFGVRCELEGVPSARVL
Ga0214917_1000675421	F074876	AGAAGG	VQEFYEIINVVYIYEEKTYGTVDQLGAFASLVKYKKDGVEHEELLENDEFAIVDEIVFHHVEENNG
Ga0214917_1000675422	F000671	GAGG	MDKILCYSCSKSKHKLNAKKSSLLPINLLMCESCINSKFEPRWLIILAGRSNGADHVREFVLKKRYIGNEISASELLV
Ga0214917_100067543	F000369	N/A	MDIELADHFDRMNKVVEELLKGNNPTQIAAVTGFKRADVLGYIDEWKEVVRNDSGARDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKATALKLIADIEGKRIGMLQEVGLLDNQELASQVAETERKQDILVKILKEVTATCPKCKMEVAKRLSQITGVVEPVVIDAEEASGS
Ga0214917_100067547	F002622	GGA	MELQYYIEIGAITLEGMDENGEMIFAIHEKAKEVAPELWQAHIQHIDESLIKLYEKGLMEVEYDENLESTLHLSPEGQQLAKEMGLIQMDFPDTPND
Ga0214917_100067548	F078287	AGGAGG	MPYNIRQGAAGCKGYAVVNDKGELKGCHPSKSRASAHMRALYAATANEQKMQERKKKIY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10006754

Overview

Ecosystem & Geography

Associated Families

Sequences