Scaffold Ga0214917_10006668

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10006668
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11923
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F012341	Metagenome / Metatranscriptome	281	Y
F013889	Metagenome / Metatranscriptome	267	Y
F056606	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000666814	F056606	N/A	MTIRAEKIVNATLELTLRPQSEDRKKVVACVIREVADRLCTDLGEMECPIDKLREIADEVEAL
Ga0214917_1000666824	F004208	AGGA	MTYKLNPEAKAFSYTREELFECITKIVAHPHNTITEHDQSRAIAIMLVFEDYFTNYTQSDNNGGHCVYECDALDFQDFANQKLGLEYYHYVDVDEVLK
Ga0214917_1000666829	F012341	N/A	MKIPMKEFFKMVTKTIAEPNTTITEQDKRKAIRVFLYLDEFMMENVPEYCDDTSELGEIDFGAYAAGVLDELEGK
Ga0214917_100066687	F013889	AGGAG	MTRTHRNLEGMHRGALRFPHTTKEIRQLDAIVNDPELKDYPVSGLNHMKSREHNLPTAWDDRVVSGYEQMDYK