Scaffold Ga0214917_10006625

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10006625
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11962
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008614	Metagenome / Metatranscriptome	330	Y
F042220	Metagenome	158	Y
F047572	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000662519	F008614	AGGAGG	MMQTDVKSAHIEATGTMVSERTRLKAYQCISGGTAGDIIFRDGGSGGTIRLRFNIGTGTQPISLLIPGEGILFTTDVHVTLPTSAKATVFYG
Ga0214917_100066252	F047572	AGGA	MATKFKKGETVKLNVATPQGPVEALRIDEDGNVQYLMSWTDAEGQAHSRWFDEEQLAAAE
Ga0214917_1000662523	F042220	AGG	MSNFIQKQIESSERLYKMMLTDHKERVEKLMEAYALSASLQKKLEERDEEIAKLRRQLQAYEALERM