Scaffold Ga0214917_10005848

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005848
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12991
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F025679	Metagenome / Metatranscriptome	200	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000584810	F016115	AGGAG	LKTLEESFTSKGFKLQQIKRDGDVAIYKKQLDDGESENYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDQLQKKLNDYLATAISPSGEKRGRGRPRKIVLTNS
Ga0214917_1000584811	F020860	N/A	MEITKAKKLKEGGYALYAIDPKTKQESQVGYIGENLDPKGWLPQGVKIENA
Ga0214917_1000584816	F007359	AGGAG	MHLVKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNSFAYFWITLEKLERVMFKYVMNSMSDKLGKKFRGAKGGLKQVVINRVKNTINNIPVESFVRTAQVQDFYSIGQVSAEKLDTDS
Ga0214917_1000584822	F010897	GAG	MKLINTTSYCSEKLKEIVKWCLPQGLHLKDIKKIDFGNTRLDWHGRAWSGSMRAHIALPTYRKYVKPYISGGFRGYLPVKTYSWEESLIELVAHEIRHIWQYKNTKWTSDSSGALKRETKLYHGIKKIRKYNMGTKAKLLEVDASLYAMRKVREYRRSNLKFSLT
Ga0214917_1000584831	F025679	N/A	MTKTFNIGEYAVGGKIKVTIPKTLTNIKIDILDSNYGTGQLVNQYIYYTFDRIRIERDLWQITTTYYTDMITSWINKNWKLELAKNLI
Ga0214917_1000584839	F011914	N/A	MINNYQIKALDENELAYLYYCLKTEWDSLNMRYEFDWYILKCFRNDSIHHLLNKYSSNLTDENKPIIMQILNKLEQNI
Ga0214917_100058488	F035200	N/A	MWTAETYLKMKQQRRLKLTTKFIVLRDGIRVSDDMHDKMESAEHEAEHWREIIRRWPDGTKVTIKKIGG
Ga0214917_100058489	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVRKLKAVYAGDDGSNDIVICDNVDGGNLFENEATAETEIDN