Scaffold Ga0214917_10005636

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005636
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13309
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F005088	Metagenome / Metatranscriptome	412	Y
F020906	Metagenome	221	Y
F027844	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000563617	F020906	AGGA	MPTSSQVSVTTTATLLVAATGFDQTVWVHNSGGALYIGASNVTTANGFKLDTGDKMELPVGDNEGLYGIVPSGTTTVYVLKQIN
Ga0214917_1000563619	F003067	AGG	MEQAQLLIGVAVGSCTILGLGAGLIRHLVKYYLSELRPDGNGGHNLRGRVDRIEARVDKIYEMLLEDRLAK
Ga0214917_100056368	F027844	AGG	MAKLKITRADGTVSEHQITPRIEYAFELYAKKGFHKAFRDDEKQTDVYFLAHECLRASGVEVPVFGALFLDTLAKVEVLDDDPSQ
Ga0214917_100056369	F005088	N/A	VGRGNFGYLIAQLAVETGIAPQYLLDLDDVMLRNMLKVLQDRAKEMQNASRARGGRTASSRT