Scaffold Ga0214917_10005559

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005559
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13414
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F006841	Metagenome / Metatranscriptome	363	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100055593	F006841	AGGAGG	LATTIYSVEEIKLQNGSTVQLKPLSIKELRKFMAVIQKTASATDQAESLDVLIEACGVALEKQLPDLVKDRDAFEDALDIPTINRILEVCGGIKMDDESANLTQAAVLAGMN
Ga0214917_100055595	F000258	GGAGG	MTVDYKADMMLDLRKFLWSQLISNKIFTATDYYSDNIGQEIIPIIPVQQAPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQVLFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFIADISPTSPSEELQGFLSADVVLEVKYARFLDSVGRFL
Ga0214917_100055596	F035307	GGAG	LDNSSVLVAAASGLEKNLAGTSGAILKDSVVAQISAAIYYQAQVVSKVTTNKQFQSKFQSVIFKQLEQDFGLYVDSQARVNPKSLHHVYEWNKIGNPGSRLFKLNIASADGLSFKINSTFLPSKSSVPNKFGRRRHVFINKASVMEAGMPLTIRPRSAERLVFETNTGVVYMPKGASVTVTKPGGGASTGRFQIAYARFFTGNLVNLSIKKSGFQRLFNSSLSKAMKLPSDIKRVKYSFSPNTLNMQAESAVAAAFGGMS
Ga0214917_100055597	F056615	N/A	MYDLVDSVMPMFMDVYRQFDLQDPNTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIMSNKYINDQILQVRTSEKINLREKLTNIRDSEGNVIWEEINFPSNTPTVFELMGITPMTDPLGGVVGYNSTVKRSENQTIGQ
Ga0214917_100055598	F058150	N/A	MEILVNSSSPITHKVFWRGQLTDADALPVVKVFDITEDPAVTPPINPGVALATLTPVKSEVDYGTYTVYIPFDYTNRQRQLRLNWVYNVNGETMYKDHKVFVQTPYTDMSQAVDSLGLGSDYSDPNSKSYLELCNAERYARKLIEAYTGQQFYLYDDVQIVYGSGSDVLPLPYKISELHELYQNDILLLDNLNDIDNWNYTTVISESGFGLRINRATMLDNTIYVANGMVPPTINDTYGGAFYNGATYRVQGTFGWDEVPDEVDLACVELMKDYFSKDKVWRNKYMKSIQTFDWQFEYNSGTYSGTGNLYVDQLLLPYVINKMVVI
Ga0214917_100055599	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIIAALAEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPNAQPEDTVLVRMTRENYRYDILGFTFTKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYA