Scaffold Ga0214917_10005528

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005528
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13467
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (27.03%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F016115	Metagenome / Metatranscriptome	249	Y
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F032572	Metagenome / Metatranscriptome	179	N
F035200	Metagenome / Metatranscriptome	172	Y
F035215	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000552815	F007359	AGGA	MKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNSLSDKLGKKFIGAKGGLKAVAMNRIRNTIDNIPTENFVRTAQVEDIYSLGTISAEKLDNDS
Ga0214917_1000552818	F035200	GAGG	MNPKFIVLRDGYRVSEDMHSKVEDAEQEAEFWRKVIRAWPDGTKVVVKKIGGDR
Ga0214917_1000552819	F010746	N/A	MTYKCAVSGEAISPERVEALQVLGVPESQWTKKEYSQTKKLRAVYAGDDGSNDIVICDAVDSGSMFDNAIVAEVENES
Ga0214917_100055282	F024954	N/A	MKNIIENLVVGKYYQIENHIAICEFFNSSSNRKCLRKVSGVGTLLAFYDEVEEVEMTPELLKQCEERKNGTMNFIGSFNASSKYKGD
Ga0214917_1000552820	F016115	AGGA	MVGRDGDVAIYKKQLDEPDTEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCIDREDANKRFVQLKEKLSAYVATSTLPNGEKRGRGRPRKIDLTKTELVVS
Ga0214917_1000552824	F010897	N/A	MKLINTTSYCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV
Ga0214917_1000552827	F035215	N/A	MSRKKRRTKMKSSEEIAKEISDRIAEYKALMVEHDNNQSAVDELESAIHELDHLLRWINE
Ga0214917_1000552829	F025679	AGG	MTKTFKIGETAIGGTIKVVIPKTLTNIRIDVISTNHITRSSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0214917_1000552832	F032572	GAG	MEMTNTYQYIENYISKPTYFCYVVDRVVNTNPYLFTGEYNKKLINKKVWVAKQVYPMCMPEQYTYFKTFKELKAALNRWGASWVRA