NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10005282

Scaffold Ga0214917_10005282


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10005282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13872
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029419Metagenome / Metatranscriptome188Y
F036680Metagenome169Y
F039535Metagenome / Metatranscriptome163Y
F074589Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000528212F036680GGAGMKITKHSLDHIELVSSGDTALFEIRLVVAMTDWSDNEAEAGLDELGALGWLMNLLHLAAQGEDIETGAQEFLKSMMTLDEQRVYLAKVEKVSYNIDEIGDK
Ga0214917_1000528215F039535AGGAGGVNGVNVKKIICLCVISLIGLAGVADAAKAPQEKGGKQMVQHPFDFVPEVKRDVPKWAKCPDLWNRLRDAGWLEKDVVKADQIVWRESRCIATAHNKNDPNTVQGVKGSLGLFQINLFWVQRTTYYPRGYLQTVLDRELMPTDLFDVDVTIASAQALIEYDRAQGRCGWSAWLGC
Ga0214917_1000528216F074589AGGAGGMTPAQIEGFIDRICGLFPTSQIGRNTVKNTWTADDFLLLQDVDDARKVVPMIMEHHDKFPTLKEVHYEFRLLRKPAIQQTVVVCEICDGNGWDTGRRWNFNTKELICEGFTKTVLDRTYTYVVPCKCREFGAT
Ga0214917_1000528218F029419GAGMSDERKGECQGNRDKCNLKDCPKFGTLGRPARDGNRRVKGCSDPTARGKRSRIKGLSKQRTARKRLGVAPSHKFGDGNEERWQDVLFANEVKAGKQIGAAVTAWLRIEAQVRSNEADYGSRRKPTRAILMPDDWGSEGLVMIRLSTWEELVRPAMHEYYEGGQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.