Scaffold Ga0214917_10005219

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005219
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14003
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000521912	F024499	N/A	MSEFTEALKESLVALYDQTGTAATIGSTSVTGILSTITRKENVELGGFDLDLNSTFTIDVANLATAPTIGSILLANSVSYRVASIDTSIGSYVLGLREI
Ga0214917_100052194	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRPMDPVTCIIKEDTGQKQFTFWFTISGGEEAKAEMERTWANMKSDEESPIRYVRAALENRETLLGLMRSAEPIISIQRGGQTLLVSQRASPELKRALLKKL
Ga0214917_100052196	F007911	GGAG	MPAVTMLDRLIEAAFQELLSATVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTQKCSKILQAFYDSSPLATRLNATTAIGSARCYNAKLESVEPEADDEERTMRRTYRLAVIAYPNSIAS