Scaffold Ga0214917_10005155

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005155
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14090
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F004233	Metagenome	447	Y
F004430	Metagenome / Metatranscriptome	438	Y
F014613	Metagenome / Metatranscriptome	261	Y
F031093	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000515510	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADPNPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTAAPKKAIQTTKPELASFIKEQRPNDPEPIVWDVSAIAEKLGAEVVDEIPLCQYGKGPMILKSGSKDGKEYRGYVCPHKDSEKQCPAKWMKIGSDGHWVFQK
Ga0214917_1000515512	F014613	N/A	MLPNLSDEAVAGIIIGVPFLSLYLWGLWTSAKAKAFNEGYKRGRSSVRYTEVIK
Ga0214917_1000515515	F031093	N/A	MQAVELATLIASVLGSIALLVGGLRYIIKLENIPIVSRLDKMESQLELALAKGVRNGNAKARK
Ga0214917_1000515517	F004430	AGG	MATGAEVLRMLIPNGGYVLVGDDYEGLQFLDCEPITKEEYEAGFAQYDAWKAEQDAAKAAQKAALLNRLGITEEEAKLLLAQS
Ga0214917_1000515519	F004233	N/A	MTLWTPDWRIKVNGTELTSVTLSNLTITSGRQDINSPTPAGYCSLEVINTDGTNYSFTINTSVTIEIKDTSGNYVALFGGRISDLRQIVRSAGSSAIITSLRITAIGALSRLQRAIFDGNLAQGLDGAQILDLLDDLLLNSWNEVPPAETWATYDATETWANAQNIGLGEIDAGEYTMVSRQITDSVIAPIANQIANSALGYLYEDANGLIGYADASHRQDYLIANGYTDLDASQAIASGIGVIQRQGDLANKIIMDYGNNFNSSYTAQDATSQASFGLFAEQFNSYLKNAADVEDVADRLIQLRAYPRDTFQSITFPLQSPEIDDTDRDALLNIFMGQPIRITNLPLNILGGEFTGFVEGWTFSASVSGLSITFLASPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS
Ga0214917_100051557	F002241	AGGAG	MGREEVSRPHSIRYIRQLMEWGFDKEFIARDCGINLASLETRLRRAEERERNGNQRTEPRIGSSESDS
Ga0214917_100051559	F000545	N/A	MDENRVRWALGISEMRTDAHPFICSSCKLVTPHIELNRYETSDIPDAPEEVWLIECQRCFMQRIIYPSDRVASKEDDITRCDKCGNWKMKAGNCRVCRLAAGFEKQMVQYWNGNATMERPYDDANL