Scaffold Ga0214917_10005060

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005060
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14232
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F046331	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000506011	F008296	AGG	VNEEWVQEYDLLVSLLASEYYRKYPMLDVEDIRQTIWMWFVTHPVKYKEWSKLPAKDKEKLIAKSLRNAALKYCEKEKSIKSGYELVDLYYYDASVIEAFLPSIIAGSYELPNKIKDLNFKFGKGEVTDGNNWLVLRSDIEKAFNQLAEAKQNILRLRFTMENCEWTELGKELNTSADGARMRVTRAVNSIVRNLGGWRTYVDTDTIENNPEDSDDRKES
Ga0214917_1000506014	F022871	AGGAG	MSELEDAWASDEDFWDFVAENKRMVGLAISDGQGLDILNALRDVYVTIENSPDSAMRMLTLLGTVIYASSIGEGKLFTDEIQITAAMEQFDTSIKEILDEESK
Ga0214917_1000506020	F046331	N/A	MERPKRSILSVRTGEQIVSHSEAPISITIKTAAGSLVTVRAENGTELDKIVAEGLDAITSATMELEKAIRGTIPTPMTVGQVASALGASITPLDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAPKGAFDKCKNVYLKTSDSAWNTFVPDQVK
Ga0214917_1000506022	F015719	AGGAG	MTMYYTELDGAEPTVSIQVKDTKYTFTNESLTRLVEEKEQLKVELQQVERKFKSAQYDVREFFQARYETDHNEIVAEVDDVNSLLKDIGSEELTKSWSATVIITATVTGIEAPNAEAAREIIEDNIELNLGADGDIWVDDVSVESTYPEA
Ga0214917_1000506029	F010612	AGGAGG	MLSMSDTLVDEPPVWEHTVWIMAKVRCRTTHINVDTAGDEALDDPSEWYVLEFDKSIKHSQEIVRVK
Ga0214917_1000506030	F010232	AGGAG	MRSREELLKIKEAFAYAMLDLLDVYDELLATGRVWVAPEPTINDLLKNEEESNA
Ga0214917_100050607	F009064	N/A	MMSIIVNLSKDEVRVCTLLAVERWLTKFGSKDKPNYAQGKIDGKLEPEINANIRANVCEWAVAKQYNLGWNTPWYPNVLHAKRYPISDVGNNLEVRSIRTQTSIAFWSKDRGKIIIGTKCLDAEYYSEVEIYGYIKPDDFAKEQYYDSYINGWRVPITEFKEYDARINSQT