Scaffold Ga0214917_10004985

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004985
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14400
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019644	Metagenome	228	N
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F040082	Metagenome	162	N
F041650	Metagenome	159	N
F058107	Metagenome	135	Y
F077020	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000498516	F005528	AGGA	MRILTAILATLTSLTMSLGIAQAVSAPAQPSHAVIALQPLWQADRLDPIQPIRYRHGDVSWLPNLAKQAGWPDQAIPQLTQIVLRESGGCPNRRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDLSRNKWAAICREMNICTQPPLLDPLTNLKAGLVLYNLAGFEPWNLCNWRDC
Ga0214917_1000498517	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATSDGGKPEHVTLYQSRNEDSVDHVLHIPVGMVKHIKVLMDLETNSSDR
Ga0214917_1000498518	F021759	AGAAGG	MDAGLATVLAAAVATFGGIVVALMQLKGLRNENKADHAIVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPTKDLPKVKQVATRKKK
Ga0214917_1000498520	F003378	GGAG	MVEEVKIKQNATMAKFFDLGQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMAVIKVVSALAEASTDGELSSEEIKAAFGKKK
Ga0214917_1000498521	F020354	AGAAGG	VFAKLRDELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLVLHLAGVLTKDGEDDGGRSED
Ga0214917_1000498524	F041650	AGG	MREDIQLSLAEVQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVAMQVRKTEYEIEDLREKGDRISQVEADIKELGLERTRLVAIGAVREYDTLIEIYDQIPHFTREQIDASQPDYWQARLGRQANLQIMSGGTNWAHLEALDQVGVLQSMIQAQQDRAKELQQ
Ga0214917_1000498527	F077020	N/A	MPKTLKWGQAYSVLLDVGAIADAFTLNTSTLNGTDVLDGSTDFVDATEYVLSVAIQRGRGSQIDQFSPGTCRILADDRASGRLFDPANTASTWYQGSFDLAPRRAVKVLAGTAELFVGAITDLDITYEMPNLSFASINAADGLYELSRTSMTAFNPSSELTSARVTTILNRAEVNYSTALRDISTGVATCGTVAYADNTNTLSALQAVAIAEDGRLFADRRNKITFDPRIDFTFSTAIASFGGTAVSAIPILAIGVAYGQETLFNRVQIDVDGGTAAQVAQDSASQTQYGVQTLAFSNVPLDTLAAGSALAQNLLDKYKDPKIRFDEISTSLNACGSALWPTVLTLDVGDVIAVTKTYETGLPLTRTESVFIESVNHDITPSDHRIRFGLGQAQLLTAFILNSSTLDDVNVGLV
Ga0214917_100049855	F019644	AGAAG	MSSEGSFDDRIKYFIESEVDVDNVCTAYVLVATIQNFKTIEEKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLTQDD
Ga0214917_100049857	F058107	AGGA	VITIGMDSFIVCQLCDGEVRLDNKRITGCLCDPDAPTWVGVEPNGRVLTFSQSHYEIVKDETQEHNYD
Ga0214917_100049858	F040082	AGGAG	MTQDPYAMSQEIVELQTRVAELSVALERVTEARDNALDAAESLHQELEASRDRIKTLGQQLDRLRIHLQQGIEL