Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10004971 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10004971 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14419
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14419

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F037567	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000497119	F008812	GGAG	MIQWVGVAIALLGFVWNSVKDYQKGEIHLPQIPKQKQLTKTVYPVQYCLMAYDPNLDKVFYLHENGQWYDYAPQQRRYEATPQVRQVQGQNQTALGNLYGSQRRSPGYVYGQQAQASTNTTRY
Ga0214917_1000497122	F000325	GGAG	MKTANGNDKLGKENCIVVSRPVGDTCPPDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRSMLVDAVKKNKDVRWHERGDFFKDGKLDNEYVDNVLWACESILSSGGSLPTMWAYTHIYDTRLSLELGKYINMYASIHDGEDMKQAKAAGFKHFAWCDSDTKIAPKRPRSKAKADAWRKALPKLVVLEGEKFITCPEIRRGRGVVTCTKTKNSVHCDLCPRGLANVLFPAH
Ga0214917_1000497125	F006543	AGG	MKKFSFVVDVVADDLDRDGVVDSIRSCLSDSLPGDVHANVKAGEVKSFSEQGYKVWRARVTGVTAEQAGDAHNSKTEAEAVA
Ga0214917_1000497126	F012108	AGGAGG	MINLQLSVREAMDLAVYCPPEMRERITNAFEVALNVNQNRTVTITNGMNLDNRISCIKAIRHHAGWGLKEAKDWTDTLVGGWKYDKFVPASAGAKQSITLKTPEAAENLLRDLAGLGCEGYLS
Ga0214917_1000497130	F037567	AGG	MEWISFFGPRRPINGQKVYYWGEYIGVWQGRYEIHRDDPVSEHILICEEGPGIVDRMDAPWWMPYEGQPRPKRPATDYPEDYPSYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10004971

Overview

Ecosystem & Geography

Associated Families

Sequences