Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10004968 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10004968 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14432
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14432

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (61.90%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N
F044969	Metagenome	153	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000496810	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRSMDPVTCIIKEDTGQKQFTFWFAISGGEEAKAEMERTWANMKSDEESPIRYVRAALENRETLLGLMRSAEPIISIQRGGQTLLVSQRASPELKRAMLKKL
Ga0214917_1000496813	F044969	GGAG	MSASLTINPIKLQQALKAFVGNTKLEAAKEMRIQARSLCVSLANSTQPFGLNAKAKAIGEKAVTRDIDRVYKTGSTAVREIGSLPIPSGKTKTQNAKQAAAALAALVLGKTFNKGKKGVAAKSEAQALIDRINYKPYVYTRIGDFDKGSAHENARFGKNRRVQKNQFVRQVVTKETELARYFKQKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVEDRSLTKAGAFSKPYISMTNTIPWISNVISKSTVQKSIDIQVVKMIKRLSIIAAYQSKKAGL
Ga0214917_1000496816	F093768	N/A	MAENPSPPKLPGKSQPLRTIRATPSGVGISSDYINSIIDRIEDLVLVAQSQKPVAGNNITVNFTSQGAVINAVTQ
Ga0214917_100049682	F024499	N/A	MSEFTECLKESLAALYDQTGTAATIGSTSVTGILSTITRKQAVELGGFDLDLNSTFTIDVANLATAPTIGSILLANSVSYRVASIDTSVGSYVLGLREV
Ga0214917_100049688	F007911	AGG	MPAVTMLDRLVEAALQELLATTVTGVNYHLSHDKTENLPPSIVIKATLGTEEPVQGSGVFSVPVEIVVNDRYDDTTVDAHTQKCSKILQAFYDSSPLATRLNATTSIGAARCFNAKLESVEPEADDEERTMRRTYKLAVIAYPNSIAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10004968

Overview

Ecosystem & Geography

Associated Families

Sequences