Scaffold Ga0214917_10004860

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004860
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14682
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F006789	Metagenome / Metatranscriptome	364	Y
F020906	Metagenome	221	Y
F023592	Metagenome / Metatranscriptome	209	Y
F090094	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000486010	F020906	GGAG	MPTSTQVSVGSTPTLLAAATNFYQTVWLHNSGGGVVYIGAANVSTTNGYKLDNGDKMELPVGDHEALYGVTASGTNTVCVLTRIN
Ga0214917_1000486020	F006789	GGAG	MALTDEEKAFLIKIGQELPVEVKETKTKATTTETTGE
Ga0214917_100048605	F090094	GGA	MSDYSEIINVQAMTGKLLKNGEVIAEYKVETCDRCNKISQLDPFGYQKSHSKENLIWFCKECR
Ga0214917_100048607	F023592	AGG	MNSLDILIGLAACGLGFLFMVVGYSIGFKHGHGEGFVRGRNIAKALRDAELIK
Ga0214917_100048608	F003067	AGG	MEQAQLLVGIALGSFTILGLAAGLIRHLVKYYLAELKPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLAK