Scaffold Ga0214917_10004616

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004616
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15214
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F030408	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000461612	F001807	AGG	MSVLAIEDTIIEGSNVTVTAVVDEMRLLYRATRFEPEEWAPALCSASFELDEGEQIPTDEDGFCSYLDQLDLHWQLIDTSDCDLD
Ga0214917_1000461614	F003601	AGG	MSDYTDDQLLAMAMANLGEYIHDNSPHYVLIEDDPRNEDDYDTWEYGTEPLPHDHTWHSTSIDVEVSPGEPE
Ga0214917_1000461626	F002985	N/A	MSYVIACWQNGMPYALTANAKTKLFELIPLNSDVALNRIFSHPYRAGAQQILTWINDNDKGLARKELSIQDEARFRK
Ga0214917_100046163	F030408	N/A	MSQTLLNPPMYVALVADRTGRYAHVWGEAKTWDLFHDQLEDVGCEVIENQTYEWYGCTNEEVAEDCLSVHQLLTHSDFVPHP
Ga0214917_100046169	F001165	N/A	MPDNTPRIPDSIDLQRLSAMQLVAKMKESADKYGVGFVGGFIAPNGEKFMMSNMSDEDTQMLLPDDLR