Scaffold Ga0214917_10004588

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004588
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15271
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F020665	Metagenome / Metatranscriptome	222	Y
F030376	Metagenome / Metatranscriptome	185	N
F039993	Metagenome / Metatranscriptome	162	Y
F073257	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000458811	F039993	N/A	MKLALSWICYQIGDLISLTLMRFGYAYSIYNKMMIWSSELDEHGKIWKNVK
Ga0214917_1000458812	F003304	GGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIVHYAGQSNDLVKLSNQIKADDAKLVELGR
Ga0214917_1000458814	F020665	AGGA	MRKKDRKITLVKTLEQKAVRVMLDVDDDLYEALAKAGRQHLAKDKMACFEYALNKALLELCEELK
Ga0214917_1000458818	F002826	N/A	MQVEAKDRLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVAWDE
Ga0214917_1000458822	F073257	AGGAG	MSNTESTKHKFYYGEETYTICVTKDDWWLEDGPSDMSELMMKCGEEFALDHGMMPPEGLCVECYKGKYIDIVEDYHIGGTTIKDLDLRRCYRCKHTVLPWQSVERVDEVLEALKKPAELCPTCRKSNTVEVTGNIKMDTVCKLNGEPFTVPNITRTQCPVCKDEFFFMSECEKIEAAIQAEQKRLGLK
Ga0214917_100045883	F030376	GAG	MKAIITMTLTAMLMASVMADDDDGDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0214917_100045889	F002009	AGGAG	VTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL