Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10004469 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10004469 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15523
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (70.37%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15523

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (70.37%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000506	Metagenome / Metatranscriptome	1070	Y
F007522	Metagenome / Metatranscriptome	349	Y
F015995	Metagenome	250	Y
F019825	Metagenome / Metatranscriptome	227	N
F021981	Metagenome / Metatranscriptome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000446910	F015995	AGGAG	MPVEVVGVKDVLKGLSFIDQDMRQRIRIAIDPLMRNVATKARGFVPSNSDVLSGWTKASTGVGKFPKYDASIARAGIGYNPGENKTFKNGFAVSNYVYNASRPGAIYEVAGRLNPQGRAPFQMTPSKGASGTYTLKSRGSKAFREYNSANPFASQQFIAALEPVTSQPKIKDIRGGGRKTKGRLIYKAWAQDSPKVYDAILNAINATAIHFNKSTEVKKAA
Ga0214917_1000446921	F007522	AGG	MTLKEAGLLWVASMVAIIWAYGIYENAKQTHYWRGRKDGWDMHRRMIQNKTDADIN
Ga0214917_1000446922	F021981	N/A	MPTSTEKLFNNATAIVHERGVVYGHAIYNMERIAKSVSAYIDYPIMPHDIPIINVLQKISRLAESPGHEDSIVDICAYMAIYKMCIEAEKDNEYEWRAGE
Ga0214917_1000446924	F019825	AGGGGG	MGYVEILRGGPYLERMENDQVKFIPSTDLCIACNDDRLIHSGNYLICTQCQCRQ
Ga0214917_1000446925	F000141	AGGA	MYPQFKCNGCKAKTEFLWLEQLDTPEGFKAYQCMSCGCVGIKNIAEALHIPDSDICRCDKCGGWKFLAVDCHTCQLIGAK
Ga0214917_100044699	F000506	AGGAG	MAKLKITRANGEVSEHKITPGVEYAFELKYGAGISKVLRDHERQTEIYFLAHECLRRANVTVPIFGLEFIETLDTVEVLDEEKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10004469

Overview

Ecosystem & Geography

Associated Families

Sequences