Scaffold Ga0214917_10004442

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004442
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15581
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F040587	Metagenome	161	Y
F043359	Metagenome / Metatranscriptome	156	Y
F059898	Metagenome / Metatranscriptome	133	Y
F088817	Metagenome / Metatranscriptome	109	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000444210	F006543	GGAG	MKKFTFAVDIVADDLDRDSVVDSIRECLSGSLPGDVHANVKAGEIKAFSEQGYKVWRARVTGVTAEQAGDAHDSKVEAEAVA
Ga0214917_1000444211	F012108	AGAAGG	MLNIQVTVAEAIAIANTASNDLHDRIVSALEMALGVNQRRIVTITGGMSLDNRIPCIKAIRLHTGWGLKESKEWTDFLVGGWKGDKWYPSATNTKQSITLKTPEAAENLLRDLAGLGCEGYLS
Ga0214917_1000444215	F059898	AGGA	MTDDKDKAMILILSFFRNKMAAVNKHSVSQIKELISTHEIAVSELVDRYVKFVYENS
Ga0214917_1000444217	F043359	AGG	MEWFNSHKNPPEVGQKVYYFGPNIGLFIGHYFYHQNRKIETYYYDENNEKIVDKVIDVCEHIFINVNNGMCDACDAPFWLPYDEEKAKSWCPIIPEEYTKGLYD
Ga0214917_1000444220	F088817	GGAGG	MNGYELMTQFENVLKDAILVPNSWLPETFRDHRTDSVSLADLENKCDSLEVGETEHQIEKREKDKRIALYADMIASGQEISYLMK
Ga0214917_100044424	F040587	AGGAG	MIQWIGVLVALLGLAYTGVKDYQKGDIKLPKLPQKQLTKPTFPVQYCLMAYDPNLDKVFYLHDNGIWYDYAPPQRRYSPQAKPQ
Ga0214917_100044425	F089832	GGCGG	MSIAHATNVVEDIVAKYYIQSGTLQLIYSTNQKPLDAAVAALWETNKFDTLDEHFYVDERGFKEYATALPDTKVYKTTKVVRKAGWSLEEE
Ga0214917_100044427	F000325	AGGAG	MKVADGNDKLGKGCVVVSRPVGDTCPSDCDYLGNGCYAEQTEKIYPGVRPAAMQNLVTEKNKIRAMILDANRREKSIRWHERGDWFLNGELDTNYVDNVTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMAVYASVHDDNDMNEAKSQGFKLFAWCDSDMKVAPKRPKHKAKADVWRASLPKLVVLNGEKFITCPEIRRGRAIITCTGTKDSISCDMCVKGLANVLFPAH