NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004436

Scaffold Ga0214917_10004436


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15593
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F008071Metagenome339Y
F074558Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100044363F074558AGGAMDRVSYGPLTLFESDAYKQAKAMKAEEDALRLEELRQRVAKGKEEEEMSTPIGRAGRAADIAAFLEQEKQKELGIPIGEEMGARMTAKGGPSILEATKMQGQLDVEARARQARVDAAKNYLAGEKSLLPTASVDVGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVAATYEAEGFDRDTAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYSNEQAERMWRDPRTPKAIKDQLNNFFGQSEEPKAQSWIKSRLGR
Ga0214917_100044366F008071N/AMEFIEASGVPETRWPNFREWFSWYERNNLVGVVKDGQEVVGVAVARAIDGSQEPAHYVHIPNGDTAFVDLTVTSIDGTSTTRSRLAMKRLLSILWDELGPRRSLIFNRNGTRKTYDYMKFMRKALL
Ga0214917_100044368F000635N/AMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNLIVDFPPSQAALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQAANADLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
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Institute for Fundamental Biomedical Research
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