NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004412

Scaffold Ga0214917_10004412


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15658
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F023361Metagenome / Metatranscriptome210Y
F078427Metagenome / Metatranscriptome116Y
F097194Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100044122F097194N/ALQTIESMQKREKDNRIFLASLQGVDIRDEQDNKGPTFEDIRLRAMGINASNDDVVSLQGQIAHEQGFGIGVGLGYSKE
Ga0214917_100044123F023361GAGMGAMNKAQEATTENESLSVLIDACAIALETQLPDLVKDRDALEEALDVPTINRILEVCGGIKLDDPNLIAAAVLAGQN
Ga0214917_100044125F000258GGAGMKVNYKLDAMLELRKYLWAKLKTAGIFDEDAYWSDNIEENIIPILPVQQYPEMNQFLSGKKHIIYDKIGVSYDTLWLICNEQILFTVYSTDVSEINEIRNFMIDEFRRMDDAAKDMNRHPGFNSDKFKIHTIYVADMSPTAPSEELQGFFSADIILEIKYSRNTDSSGRYL
Ga0214917_100044126F078427N/AMTASKGGVMKESLVAQISAYVYYNVQVISKLTSNAAFKNKFKEVIFNQIEKEFGEYVDSQARVKPKSLHHVYEWNQTGDKSARLFKLNKLNTEGLGFSMTYEFLPSKSFAKSEGNRRHVFVNKASVMEAGMPLKIAPRHSKRLVFETNGYKVFMPIGASVTVRRPGGTGVKNSFMMTYSRFFRSNLVNLAIKRSGFQQLFNRSMTKALNLPSEIKTVKYSFNPNTISIQADAALTSAFGASL
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