Scaffold Ga0214917_10004407

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004407
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15671
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (45.28%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048121	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000440710	F034827	N/A	MKYTITSRDKEAMVDFDSVKEGEVFSFFDPESVQRGNHSIFMKIKNGSNNIVNLDDGRVFNFADKKRITISDPDEQRGNLVYKLNAKINIIV
Ga0214917_1000440711	F030670	N/A	MNKVIRYIKELEDEKGEPLNRWAVYEETITQKGNWVFPDAKIVKTFETPYHARNWMENDRKRTY
Ga0214917_1000440716	F027756	GGA	MKLEDLIDRKILFINYPINKYAIQEGKVSEISPAKKCIKINSDWHLIDNIRIIELFKENERPKLGFGLPAKEKDAK
Ga0214917_1000440717	F032548	N/A	MQNKDMEKAIQLLDELVFQADEDCPQECRTRHFTDILLEASEFVKEYKNQK
Ga0214917_1000440718	F036564	AGGAG	MKLGRVCLDLNYIVDMDNDEMVKRAYECLYEDLMQGVKYGDIGNWIDVIEDKNAKEDMIPEFLLEKEND
Ga0214917_1000440720	F044916	N/A	MGRKKIEKSRIQKSIEKEEKTFSLMAKKIVDAIEDEKFLREFTKQCLESLYKDDPKLFADHAKLKLKKK
Ga0214917_1000440730	F016774	GAGG	MPLKKAKIQLLSEHIASLNHWRDELLKLDKTYYHKDHEKERTIKNMINKYLDDVLEHNKKSKEKPKN
Ga0214917_1000440733	F048121	N/A	MNTTQTQYTWSVKATNGQVVVAPKSYPTLRGAKIASKRFANKTGGQVVSVSTK
Ga0214917_100044074	F024040	N/A	MNIYVTGYNWSAKVDIDTKKLDKADWYSEACTRAVESVLDQEEKEGVELKIDDYDNFGLGVILLTWDEKNIKNEDEHRVLLTSNVLANAGRWEEFNEVKAYEDKCKEEGL
Ga0214917_1000440740	F026210	GGAG	MSHFVNANPLNYDAKYPQTADSHTNDKAKMVVMERNIDKEVMFQIDDGTQFYGKISSVPNSEHYCVVVGENWDWYVREEAIHFVENIY
Ga0214917_1000440748	F011914	N/A	MINNSQIKALDENELTYLYYCLNSEWDSLNMRYPFDWYILRCFRNDSIQHILNKYSSNLTDENKKIIVDILNKLEQAK