Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10004240 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10004240 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16079
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (57.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

16079

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (57.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003661	Metagenome / Metatranscriptome	474	Y
F010026	Metagenome / Metatranscriptome	309	Y
F011666	Metagenome	288	Y
F033013	Metagenome / Metatranscriptome	178	Y
F056612	Metagenome / Metatranscriptome	137	N
F087198	Metagenome	110	N
F088884	Metagenome	109	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000424010	F087198	N/A	MDSYQRNAETLLNELAQLKYEQRAIELRIKDVQAKLTVHVAAGDMEHLAGESENTYKYDNINYVFSAGRVTYDYSNCEDVTAAADNLKELQSTAVALGRAVQKVGTPFWTVRA
Ga0214917_1000424016	F088884	GAG	MKLFAPEHAGKHVWQVADAKTRSVSYTANNSTSPPPDAVHGHPLGRYDSDGLYWTFVPMAGEEDPRSPRSGRFSKHPLAEEEQRKAVKEKVWGRLDSFGSYKETEF
Ga0214917_1000424018	F033013	N/A	MAIQLTAKASTLKTVMLQLDPELYARIKFVAKKHNLPAAVAMRQILEQGIEEVEANA
Ga0214917_1000424021	F056612	GAG	MSNFESAFDAKFSLFQVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEAGVNDVPMF
Ga0214917_1000424022	F091645	N/A	MDFAALFPEHVEPNCGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPCATNIDIGEGRKIIAAPPKT
Ga0214917_1000424026	F011666	N/A	MDWHPIERTQESQFSEIATAKMLEEWLRQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQTG
Ga0214917_1000424031	F003661	AGTAG	MDPTTAAAIAIVIAAGSEIIALLPIKENSWVQLVMKALKILFPKR
Ga0214917_1000424033	F010026	AGGA	MAVKSKVGVKSIQRIPNPPKKTRQGNGKHSLPNHGRKLTRGQGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10004240

Overview

Ecosystem & Geography

Associated Families

Sequences