Scaffold Ga0214917_10004067

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004067
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16532
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (41.38%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F044916	Metagenome / Metatranscriptome	153	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000406717	F034827	N/A	MKYTITARDKEAMIDFNLIKDGEVFSFFDPESVQKGNHSVYMKIKNGTNNILDLDDGKVFNFSDKKRNTLNDPDEEQGDKVYKLNAKINIIV
Ga0214917_1000406719	F030670	N/A	MNKVIRYIKELEDEKGKPLNKWAVYEETITQKGNWVFPDAKIVKTFETPHHARNWMENDGKRAYQSS
Ga0214917_100040672	F039497	N/A	MSEENFNCQAGNQLRQILYKDIVRYAHESDMTAYQVIGVLESLKYDLLNAMLNLAKEDEGDEI
Ga0214917_1000406724	F027756	N/A	MKLEDLVDRKILYINYPINKFAIQEGKVSEISPAKKCIKINSDWHLVDNIRVIELFKEDERPKLGFGLPKNEKEAK
Ga0214917_1000406725	F032548	N/A	MKKKQNKVMEKAIKLLDELVFQADEDCPHECRSRHLQNILLEASEFVKEYRNSK
Ga0214917_1000406727	F036564	AGGAG	MKMGRVCLDLNYIVDMDNEEMVKRAYECLYEDLMQGVKYGDIGNWIDVVEDKNATEDMIPEFLLEKENE
Ga0214917_1000406729	F044916	N/A	MGRKKIEKSRIEQSLEKEEKTFSAMAKKIVDAIKDEKFLREFTKQCLESLYKDDPKLFADHAKIKLNKK
Ga0214917_1000406736	F096610	GAG	MAVRPKTYFVKMTDNTDGTFTISESKVLDKVNQHARHWRSFDKRKLTSKLRNSVLVTK
Ga0214917_1000406749	F026210	GGAG	MSHFVNANPLDYDVKYPQTADTHTNDEAKIVIMERNIGKDIMFQVNGTQFYGKIGGVPNSEHYRVIVNRNETPWEWYIREEAVHFVIDPLQKTNIL
Ga0214917_1000406758	F016774	N/A	MAKDKKLKLLTEHIASLNHWRNELLNLDKQYYHKDHEKERTIKSMINKYLDEVLDYNKKKNSTK
Ga0214917_100040678	F024040	GAGG	MNIYVSGHNWSAKVDIDAKSIDKSDWYSEACTRAIECLLDQEEKEGVDLKIHDYDEFGLGLILLTYDEKNIKNEDEHRIVLTSNVLANAGRWEEYNEVKAYEDKCKEEGL