Scaffold Ga0214917_10003553

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10003553
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17895
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (69.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F054798	Metagenome / Metatranscriptome	139	N
F056376	Metagenome / Metatranscriptome	137	Y
F060726	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000355312	F060726	N/A	MYGDNKSVLYGKKMYRNVLLTDKEIALLKSVISQTLHDKVSIDRNNLTIIHNRLREIKPLVSNNQFFNYGK
Ga0214917_1000355317	F056376	GGAG	MTLIKCFSNVIGHKEAQDLVVDLNQMKSSQSDPFYIKYDKHQDYSKDDNYLVVGNVTQNDWDELNLDMDFMIADIV
Ga0214917_1000355322	F054798	GGAG	MIYLYLNETQRLAEIVSELVKLNMGVVAELHGNRWHIEVTQ
Ga0214917_1000355346	F007110	GAGG	MNCIYCKTDVGIDRYEFLVETGRKIICKECSMEQRAVGFMNFSHKTAPDLVVCPANAKETLRILHRANRRAR