Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10003498 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10003498 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18071
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (66.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18071

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (66.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000349810	F010449	GGGGG	MSEEQVWGMEIRLARMEERQVQLYAMVERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLACSMAWDVLKNRFN
Ga0214917_1000349813	F000635	AGAAG	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLKTSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214917_1000349815	F002149	AGAAG	MNALEYIEESGVPESMWPNLEAWYGWFEKQGMVGVVKDGEEIAGVALARCVKDGQEPKHYVHSEDGENVFVDLTISSKGGKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0214917_1000349818	F025460	AGGAG	MAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPTFAPYLAGIGSTISNEQNLQNEDIETQRAELSDRLKELQKKRVKQEIEIAKGDTRTFAMEAGLGLVGAKPRADVLKDIEAEAGVYKNKLAELGFNRQTGQMETNVPDYQSSTMPLQAPTQVAPEKPAQAPAQAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQAR
Ga0214917_1000349821	F030376	GAG	MKAITTITLMAMLMASGMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0214917_1000349823	F007467	N/A	MKDKEAWDKFEDGLQDAQSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0214917_100034985	F010603	AGGAG	MANEFVRSPRKAKGKAIRFDTQGQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10003498

Overview

Ecosystem & Geography

Associated Families

Sequences