Scaffold Ga0214917_10003420

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10003420
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18324
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003304	Metagenome	494	N
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F012569	Metagenome / Metatranscriptome	279	N
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000342012	F000635	GAGG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANIDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214917_1000342014	F002149	AGAAG	MTALEYIEESGVPESMWPNLEAWYGWFEKQGMVGVVKDKDGIAGVALARCIKDGQDPNHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKAKV
Ga0214917_1000342022	F007467	N/A	VNEKEAWAKFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNDDISKANKTWRN
Ga0214917_1000342026	F002009	AGGAG	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVTRL
Ga0214917_1000342027	F041081	N/A	MEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHYFAEVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0214917_1000342028	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR
Ga0214917_100034203	F004760	N/A	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSEYTPDSIKRAALRRKKYGE
Ga0214917_100034205	F012569	N/A	MSRALDKFQGQYGFSVGTTGTAPAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG
Ga0214917_100034208	F010449	GGGGG	MSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGVVGLACSMAWDVLKNRFNG