Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10003186 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10003186 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19210
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19210

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000318610	F033780	N/A	MGCPWSLVAVHWTDAFDSSNGWIDMKEYKPKACHVVSVGFLWPDILTGYVSITGSYMPDELPDMDTVGMVTHIPVRMVNKIVTIGEPSWGDLTL
Ga0214917_1000318619	F078657	AGAAGG	MTENQNIFYEAWISDLQRDLDSLREDKRELLQKVARLEQTVAEYGNKLTNLIYQRGDE
Ga0214917_100031862	F022860	AGGA	MKKFWAYIADQTWTLAGTGLVLITLSGPTLRQALWLTGVALVLHSVLTFTGGKDE
Ga0214917_1000318620	F045719	AGGAG	MEATWYKLKDGTWGVKIRHDGQTGDQVEVTNKKGETKTVWLDSRTAKFDDAQLWTVTDQAPDQPVEEPF
Ga0214917_100031863	F003378	N/A	MLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTKEEIQEAFGKK
Ga0214917_100031865	F060870	GAG	MDGGWALVLAAVVTAVGGIIVAALQKFRKENHDDHAYVRGMLSMLYKSQNRIEVKVDKVDERLTNHLEFHASEGMLDNGRTIQQDGVEGTSKVS
Ga0214917_100031866	F103171	GGAGG	MGEQFSKMELKALARFLRKVYPGVGDQDELWNLIEKIEQLTKGKHGTVNRRRRDTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10003186

Overview

Ecosystem & Geography

Associated Families

Sequences