Scaffold Ga0214917_10002874

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002874
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20553
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (63.41%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F007467	Metagenome / Metatranscriptome	350	Y
F014827	Metagenome / Metatranscriptome	259	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F024501	Metagenome	205	Y
F039993	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000287415	F024501	AGGAG	MTHPKQLDEAGITESYLKKLAKKEGVSYKKALQIAMEQWGEYSLRLINKIVGEEIKTR
Ga0214917_1000287418	F003962	AGAAGG	LNHDREQLKVAHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLQDSIPDVWDQDEVDDQ
Ga0214917_100028742	F001459	N/A	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNASAVMKKTAELAEACGRANGYRACVATLESLASQKLNSAIPGYGDGSDEPVAD
Ga0214917_1000287425	F002826	N/A	MQVEAKDRLKWGRDILLIARDKLAIERDRASHGRVIDIIQIITMVDAAALIAKEILEDNK
Ga0214917_1000287431	F020665	AGGA	MRKKDRKITLVKTLEQKSVRVMLDVDDDLYEALAKAGRQHLAKDKMACFEYALNKALLELCEELK
Ga0214917_1000287432	F022371	AGGA	MFCLLDIAGVVWVIGWFVLYSSLTLSALYCAGYLIFKLIEIIRKELDR
Ga0214917_1000287434	F003304	GGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPSQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKADEAKLVELGR
Ga0214917_1000287435	F039993	N/A	MKLALSWICYQIGDLISLTLMRFGYAYSIYNKMMTWSSALDEHGKIWKNVK
Ga0214917_1000287441	F007467	N/A	VNEKEAWAKFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISIANKTWRN
Ga0214917_100028746	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNLEADWRKNREAIERDLRGESWWLRNNDTSNPNNGGS