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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10002693 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21342 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (72.22%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002009 | Metagenome / Metatranscriptome | 604 | Y |
| F002826 | Metagenome / Metatranscriptome | 527 | Y |
| F003304 | Metagenome | 494 | N |
| F003962 | Metagenome / Metatranscriptome | 459 | Y |
| F004010 | Metagenome / Metatranscriptome | 457 | Y |
| F011649 | Metagenome | 288 | Y |
| F021063 | Metagenome / Metatranscriptome | 220 | N |
| F022371 | Metagenome / Metatranscriptome | 214 | Y |
| F024501 | Metagenome | 205 | Y |
| F058800 | Metagenome | 134 | Y |
| F065527 | Metagenome / Metatranscriptome | 127 | N |
| F098901 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000269311 | F058800 | N/A | MKQTLSRLFYFLGDTISRTLLRTGIGYGLYRTFMLWSLELDERFDVWKEIKPKRRRKK |
| Ga0214917_1000269312 | F003304 | AGGAGG | MKQAMVTQSFGDEWKNIIDLTRPRMEAYCKRHSCDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGIIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKADEAKLVELGR |
| Ga0214917_1000269313 | F021063 | GGAG | VRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPT |
| Ga0214917_1000269314 | F022371 | AGGA | MLCLLDLAGVVWVIGWFVLYSSLTLSAIYCALYIIFKLIDYIRKELDL |
| Ga0214917_1000269318 | F004010 | AGGAG | MLGKDVSKNMHELAMDNKKKGKERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSGS |
| Ga0214917_1000269319 | F002826 | N/A | MQVEAKDRLKWAREILLIARNKLAVERDRATHGHAIDMIQIITMVDAAALICKEIIEGE |
| Ga0214917_1000269324 | F003962 | AGAAGG | LNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLQDSIPDVWDQDEVDDES |
| Ga0214917_1000269327 | F024501 | AGGAG | MTHPKQLDEAGITESYLRKLAKKEGVSYKRAVQIAMEQWGEYSLKLINKMVAEDIKTR |
| Ga0214917_100026933 | F065527 | GAG | MKAIIMATLTAMLMASVMAEDDDEVSIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGEKGSWITSKPKIDD |
| Ga0214917_1000269330 | F098901 | AGGA | MKKKEQVGRRKYKVEFTQTETFIVDVYAKNENEAKVLATRTFDAGDYQEQGDCEVELNCVYDVTNTDDPFYPQQR |
| Ga0214917_1000269332 | F011649 | N/A | MDETCATPSAPIEKAKNGRDIFTEKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDIQLAGEKSWQAKAWILERGYNWAQPSARLNVTQDVTHGISGNLASLLAGIAGRKKTQVIDAKAVEVKTALPIRDNSYCATDATQTIVMTTPKIPTKTRHRRMKTRKPRAESLAKYTTTPPATPPAPI |
| Ga0214917_100026939 | F002009 | AGGAG | MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSLPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |