NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10002448

Scaffold Ga0214917_10002448


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10002448 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22541
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (80.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F013741Metagenome / Metatranscriptome268Y
F019966Metagenome226Y
F035668Metagenome / Metatranscriptome171Y
F047566Metagenome149Y
F059759Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000244813F013741AGGAGMSDPKTTNQALLLQIVRDIEILKANSIQILQASQDHETRIRDLEKQTNRNAWIPALITAVVTSVAVYLISRGFGQ
Ga0214917_1000244816F019966AGGMSDFEVSTEYKLQILNQRLEQLNVEGWHNEEARTVASALGNSEEVARLTDNIETIKTAITAVKEQITALTA
Ga0214917_1000244818F047566GAGGMKLVLESLKVKGKAVAEVVGALIWRGFGIGLFILGGSAGVGSALTGSWINGVLVAWGTLMISVIGVLGYAIATTGKATKADVAKGAVDAIKRAETESQAKNK
Ga0214917_1000244830F011142AGGAGMAVVKVEGTVTKVFGSSNQGLSLVEKFKGLNGEEYSRTWSCWFAVAHNLVEGSEVTVTGNLSYKIEEYEDKTGKAGRKVKLDINNAQVAADLPF
Ga0214917_1000244832F059759N/AMTKEQIWELLEIYKTMQSANTITQYNDAFEELHIFIEEHCLKVAA
Ga0214917_1000244838F035668AGGAMIDSGVVKNCSNCAETGCQCARSNAVNIFSREYKAGELKGRRDEATRTTDALIELERKGVITNAQMQTIFDLILEKLTDVKDIP
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