Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10002375 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10002375 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22972
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (65.52%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22972

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (65.52%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F074558	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000237510	F000635	N/A	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214917_1000237515	F003112	GAG	MTAKEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVSLRYLEGKGRES
Ga0214917_1000237519	F010603	AGGAG	MANEFVRSQRKAKGKAIRFDTQNQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT
Ga0214917_1000237520	F004760	AGGA	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSKFTPDSIKRATLRRKKYGK
Ga0214917_1000237524	F001459	N/A	MRKLKAALAFIRNQEWVNEPKWEDEDEKAWTGFLSSPTGQKLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAISGYGDGSDEPVAD
Ga0214917_100023755	F074558	AGG	MPAITQAARDYDKAMQQMQYDKAMKSELELQKLQFDVAKAREEADMSTAIGRSSKAADVAAFLEQEKQREFGIPIGEQMASKMVAQGGPSILEATKMQGELDVEARARQARVDAAKNYLAGEKSLLPTANVDLGGVKQTVLAQQAGKTTADIYGQIYRNQVPQVAATYEAEGFDRDSAIRMASQDVRKELVKASSGGRVVLAGADGVSTISYNNEQAERMWRDPKTPKAIRDQLNNFFGQSEEPKAQSWIKSRLGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10002375

Overview

Ecosystem & Geography

Associated Families

Sequences