Scaffold Ga0214917_10002235

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002235
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23877
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016149	Metagenome / Metatranscriptome	249	Y
F017453	Metagenome	240	Y
F032583	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000223510	F032583	AGGA	MSKQIKLPSGNTVKLKDPKDLRVKDRKRVIKTTDSQEGDLSKAMALGEAIIAMLVEEWSFDLIIPSIKIESIEELEMADYDYLIEQTKDAQKALFPSLTESDDNAADPKAITADSKD
Ga0214917_1000223516	F017453	N/A	MSRLALTPTNVPSSASDISTPTLRAGDLYYNTTTGLKVYSGSAWVVVSSAAITEIDAGVFDSIAPYSGGDPTTTATQTYDGGSP
Ga0214917_100022355	F016149	AGGGGG	MARMVAPDRGVKETVIGGSKYNPDKGGIYNVDNSRHVNAMKAEGYFEAALNPHSAGDAQRGFCCVECGFNGWFRKCGRCGVEAVSPPPRDGE