Scaffold Ga0214917_10002209

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002209
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24067
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (86.36%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F019644	Metagenome	228	N
F031461	Metagenome	182	N
F037220	Metagenome / Metatranscriptome	168	N
F041650	Metagenome	159	N
F041770	Metagenome	159	N
F078386	Metagenome	116	Y
F080025	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000220917	F041650	N/A	MREDIQLSFIECQMPRTPYQLQRFVIGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATCDEIDAIDADIKELGLERTRLVAIGARRELDELIKMYDQMPHFTRQQIDESQPDYWQARLSRQANLQVMAGGAGWAHLEALDQIGVLQPMIQAQQERAKELQQ
Ga0214917_1000220922	F031461	AGG	MVQVLADQAPAQIVATIQQVLTADITSDQAVSIASSAEVLAAVTEEQAEAIFAEIVVDELTAEVAEELVAVLNEAPTKVKKKFQETINVFSGLFNSYKMVGSTIPVGERRTLLAVSNTLVAVGASLRRRDR
Ga0214917_1000220924	F003378	GGAG	MVEEVKIKQNQTVAKFLDLSQRLFSLFLANALPAITTGAVIGISVAKSAIMAGAMAVIAVVQKLAQASVDGELTSEEIKEAFSGAKKK
Ga0214917_1000220927	F006986	N/A	VSVVLVTWHDAHSGAESWINIKDLDTEPAVVESVGFLLNEDNGGKPNHLTLFQSRMEDSVDHVLHIPVGMVQKIKVLMELEIIS
Ga0214917_1000220928	F078386	AGGA	MRILTAIMATLASLTYSLGIAQAVSAPAHEHRAAVHLNPMSADRLDPIPADQPIVFRHGDVSWLPALALKAGWTADQIPKLAEIVLRESGGCPNRRGGDMVDKDCNLTGVSEWNHRSDTSLLQINGQNFDPTRNPTAPICLQMKICTQEPLFDPLTNLKAGKLLFDYWEKAAGNGWIPWDPCNRTRTCKASTKSLP
Ga0214917_1000220934	F037220	AGTAGG	MSDEQDLLAGGGPKLPSLKFEKIGDIHTGIVLDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTETGDGECNLWARGAMITAIREAAKQASVTELTGNKISVKYSADGEKKAGFNAAKLFAAKVEKVATDDRW
Ga0214917_1000220937	F041770	AGG	MKTESVGADILLEAHLLVTGARQDSYGNVTEDYSKVIAIFEGLTGVKLSIADALLFMVSVKLARLRTNLHKNRLHHDSLLDTLGYLGLLNQAYNDLPFPRTVAEK
Ga0214917_1000220939	F019644	GGAG	MTMSEEEQTFDDRLKYLIESQCDVDNVCTAYTLVATIQNFVTAEEKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLLQDE
Ga0214917_100022095	F080025	GGA	MSIAVCVTVWGDFWDRFGGQFVEQMEKLNTEPDEVIVSSPVPLNLPKHWHEIVQPHHKWNNWNDTMFAVNSDWVMPVGMDDIWFPDALDGLTDVDDDVNIIAYPWIQNGQLQSATQEVFNQILHVSHNPMVGGSLIRRSVLWSIPYRQVVWNDWIQWMEIRKLGYKVAFKTKPVCDHIRREDSYSIAPKANGELECEQMRAILREHEVVPGVEFPPRILK
Ga0214917_100022098	F011391	N/A	MAKYQVVEGFTVLGKQYPATIDGEEFDHLDSLLQSGRIVLVADKPTSKAETAGDK