Scaffold Ga0214917_10001990

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001990
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25525
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (85.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F006544	Metagenome / Metatranscriptome	370	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F018684	Metagenome / Metatranscriptome	233	Y
F050167	Metagenome / Metatranscriptome	145	N
F093272	Metagenome	106	Y
F104514	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000199011	F050167	AGG	MTTTTAEQIENYLASISLTLADLSDELATIQFDLEDANGYEPRGTILKALPNQTRFKPKSVWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP
Ga0214917_1000199019	F001531	N/A	MVELEDIRQSLYQWFAEHPNKLKDWEAIGEKDAKNLIYRSLRNQALDYCQRWKAKSIGYDVTDLHYYEPEIVEALLPPVLRGEYGVTHKLNLGRPGRPSAPAEGGNLTIMMLEVDSGYWKLSKDDRRIIFLRFAENLDFGEISNYLELGTDSAARMRLNRAIRRLINKIGGYKPYHDVDTESSQEESQESEVQPPQE
Ga0214917_1000199023	F008808	AGAAGG	MSKEIPPCPECGERFENVFEATDHLLEDDEEFDPALVLPNGARLMIGSLLRCLFKYANKPDQIKSITQSTYMTLFTAETQPEAIKDIVEEMIIESQMMEIDDEIKKLLEGDK
Ga0214917_1000199026	F009064	AGG	VIITLSKDEVRVCTMLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNALHKKRHSLPDVGTNVEVRSVRTQDSIPFWGKDKGKVIIGTKCLDLEYFSEVEIFGIAYPEEFTKPEYYDNYINGWRIPISGFTHE
Ga0214917_1000199029	F018684	GAG	MANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGIGDYSPQIAATQQKVVGAYNLSPLSTSSSTTGTRPSNYSAPTPVSAASGTAAPVCKHGARIWREGISKASGKPYAFWSCPSPQGTPDQCKPVN
Ga0214917_100019903	F006544	AGGAGG	MTTLAAIQGNGWSVIGSDSRSSDEYGRPIDMATNKIIENNGILIAGSGAGRGSNLLQFGWKPPKPKIGEDLDLFMTKKFIPSMRKLFIDAGYDMKEDGDAAAHDSQFIISIRGVLYPIFEDYSWDRDTRGIYYSGSGGDIAIGAMAALNVDRVTSAITAEKIIKKAIEISTKWDIYSSGPIITKIQYSR
Ga0214917_1000199037	F104514	AGG	MIKPNETVSIGWCDNGTTDGKFTEGLISIILAGANNGMPIASSIRVQGNQIARQRQSLLDHWYDKTKTDWLLWVDSDIVVDMNIWKLLHDTADKDTHPMVSGIYFIAKDRDGSLPVFMPVIFDDIDEYTVKYHHPLPPNQVLKIDMAGMGFVVMHRDVVTKLREKYGTDVSFFAENDQKAEKFVGEDINFFRKCKAAGIPLHAHTGAIAKHMKTTVWDMDMYALYWSMQHLKDQIKAQQTQGE
Ga0214917_100019906	F093272	GAGG	MPYNPYGVSGSIITPPRQVRASKAWRRQYPRKAYFSNLVVRDKAGNIIVAIEDSQAVKLAKRVAKNAKPKDTTPKPLTELELRRIALDERKREFEAKQAENYRKLVGNYN