NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001944

Scaffold Ga0214917_10001944


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001944 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25902
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (74.51%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F014496Metagenome / Metatranscriptome262Y
F016958Metagenome / Metatranscriptome243Y
F034902Metagenome / Metatranscriptome173Y
F047645Metagenome / Metatranscriptome149Y
F049499Metagenome146Y
F058095Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000194410F058095GGAMYVITTYYDGELYNTHRIADFTDAAQLWALCKDHGNAKEYATYNLTDPTGKMYTKNFYADGRVTIK
Ga0214917_1000194412F005092AGGAMDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNPYGLILDEDGDVIWDNGLLSESELSIFATGEAN
Ga0214917_1000194419F014496AGGAMKTYSIPDLLVGQTYYPRSLARKYQYGEITFAEKREDIWLDGYEAYAIRFNGSRWATVAVKVAD
Ga0214917_1000194424F016958N/AMAGNTSSMELPTKEDVYYFIDLYKSALKKNQRVKITCDILGIDGYLQGTKPIR
Ga0214917_1000194426F047645N/AMTNPKSCIHVYEYVNSEVCPHCGRYTHEPDRELHYKLFKQYYEEGKHLAYKCPVEGGTIRGWWSI
Ga0214917_100019443F034902AGGAMISTALAIQEATRDAVHDEEVMGMASAIFHHRHELDEDDFIKAMYMYSAHLSAMTATLVTHACLTESQINDMLETIKEMEAMGKDIE
Ga0214917_100019449F049499AGGMLTMDYRMVDVLNADQLEENDLIGIAESIVKIISITPTKEGFVLIHEDEYGEKDVLEIFDDEQFELFILE
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