NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001690

Scaffold Ga0214917_10001690


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001690 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28144
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (41.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028492Metagenome191N
F047652Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100016903F047652GGAMVKTKDNVVRMEAPVIMVPDESDREIPVLMNRHYINWIMEHAKKKKLSIQGYQLKGKNIEITFKNPKHASVFALTWKEDE
Ga0214917_100016906F028492N/AMLCLCKRQHGRPKLSNKIAIEEGIDVAVGDSIIVIKEDGSIGQVILPEVNNPAQESKGYKLTLDILEFIDREKGALIRSATNRRKYN

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