Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10001490 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10001490 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29886
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (44.44%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29886

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (44.44%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F027508	Metagenome / Metatranscriptome	194	Y
F052555	Metagenome	142	Y
F067679	Metagenome / Metatranscriptome	125	N
F097236	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000149017	F027508	AGGA	MTASSGQDSASDFDINRFEQLLERLEASKGRQQRQKSVEGRRDIFAGGLANMMSNF
Ga0214917_1000149022	F067679	N/A	MAVSSRPEQAQTFLKRAADAYNNAMHSVGNLMPTKIKKGFQSGVELMTPESRREITDEQGNRILSSISNYSTFSPNFKKELKDVKGISFNETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKSLVSLAISAPTVASLGHIDITNPFEQFRSKGFAQTYAEEGAEDRRETSQPGTEVIERLLLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGVIGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTQPPVVTTKERRVISYPGASSGIVEKDIKTKVPMATRKTASIALAGSLVGALVGNLTNQAIASLNNNPENLPSTNEYR
Ga0214917_1000149027	F001806	N/A	MGAIVKEQSICTRMDDETRLKRVEALETIKNKALEKAQRGEDALEVRDFVTSAKKELAYELPDEDAFRKAMKATLAYKAKKG
Ga0214917_1000149028	F097236	GGAG	MIDLTSGWVQHSVVSGGWHLEYVDPVVGFDISIVTGPKGSGLMGVIAPGQPTTYEAWLPGLSNPTGYLTLDEIRGIIMYLREKHRDDTMYAN
Ga0214917_1000149031	F003687	N/A	MTPKAVERLLTQDARLLARRDSPVIDEELEAQRQAALEVFFKWQDHACQFQEVIPFCVVLQRKVDLNRDLLRWERQNAV
Ga0214917_1000149037	F052555	N/A	MTITTPHINEYTVLEGILKDLKAIVIRESKRPQGCEDLTPSMLALLEEEIIPQLENELDYDPTPQYLYDNTGGELPITANEMYEIARAHSKLLHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10001490

Overview

Ecosystem & Geography

Associated Families

Sequences