NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001409

Scaffold Ga0214917_10001409


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30805
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (76.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F002501Metagenome / Metatranscriptome553Y
F004006Metagenome / Metatranscriptome457Y
F005000Metagenome / Metatranscriptome415Y
F018177Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000140910F002501N/AMRGGREVVYTIMWCGKCQGRVFVDRVFSQKLHIELFCILCGKRWMINKETSAFGRWLDEKERANSRNYGISS
Ga0214917_1000140915F005000N/AMNHKQIKRFQVRVEFGDDSGIPRLRYQYESMLTHDMRSKGYARVLDIDTNFSVQFDGETWVFLMTLYGVYVGKKQAWLSEGITQGKLVPRNMRPTTLSQS
Ga0214917_1000140919F004006AGGAMTEDVDGLITSISMNQVLVAILEEYGKLTVPTLRFLDVNVSNKELVIDYDETTPSFTFSLREKNGIESDSD
Ga0214917_1000140922F018177AGAAGMPNINEFLNKPEKIFAPELEKIGGVKPCNKCDKDAQEYFWDAVNMTISWECPDGHKNAYVVG
Ga0214917_1000140934F000369N/AMSEIELSEHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKNVVHNDSNIRDRAREAISGADQHYAMLIKESWKTVEDADQAGQLGVKATALKLIADIETKRIGMLQSVGVLENNEIASQIAETERKQEILVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPAEESDVV
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