Scaffold Ga0214917_10001401

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001401
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30935
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (65.45%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F014487	Metagenome / Metatranscriptome	262	Y
F025739	Metagenome / Metatranscriptome	200	Y
F030060	Metagenome	186	N
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000140118	F005702	GAGG	VIFGLIIFVGLVIVRGLYMIAQHIDQQNYERRRFYLSVAADLDRLDKIVAEGNQPKEPELVLPTKNWVGRN
Ga0214917_1000140119	F005846	AGTAGG	VPANHDEFSDGFSIEGKLNGWRGWFDQQTQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0214917_100014012	F007164	AGAAGG	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKADQAWHSYIIKARQWLARKSVTNWTSVQKADFVSEAEPIVRAFVEAGGKLPPNG
Ga0214917_1000140123	F011284	N/A	MTSTQGVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEENKGTKLWEMPTARLVEESIAEATDQMVYLLSLRQQMHIVMELAKEGCTDETLTNPRARECCNLIYTTLTGQSKPPL
Ga0214917_1000140125	F025739	GGTGG	VQRPARKETMKKSLTNAVCEIRKSILGFTAASLICGCATTRPYDIGEVPHQDSISDYIMRWDKLDRSKATPEEYRQLYGQTLKTISRLVEENERLRKRLDQ
Ga0214917_1000140126	F012113	N/A	MNQLLAFVQSQDVFAWLGALVALLSAVIAVASLIPGDEPEATLTKVVQFLSRFSRK
Ga0214917_1000140133	F090073	AGG	MSDILDDELNGSFVKPGRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFVWAFLYIHILIAKNRKEAIKLAWNRDEFRDKLLGWIEDKTEEDRAVATNIVSEMIEEASRAKVSVVLSGNIASGND
Ga0214917_1000140138	F014487	AGGA	MPLLLLTLFLCSCSPRPADNNVLPRYSDMGAAEDAGKVK
Ga0214917_1000140141	F009142	N/A	MTNSVQINVEDALDKILTNVSGLNVYKSNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEALYSETPPLFTKIQNNIFDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRYLNFYQKQNSMYVAVI
Ga0214917_1000140143	F005584	AGG	MAGTISTSYFATDLSYMIGDLYQSVTGLGSSAISASVTDLVTASDLEIGGEVFRVTQSIVVLASSISAPTIGSLCTVSGVERMVGGFSQSTDGLSYTIELAEITT
Ga0214917_1000140144	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDANKTNIVLDKLDEKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPEDIKIQGLNTYTAKSLEQMAKAIRGATDFWAINSTPIILASVTRRDKRTGFFPQKNEWETDNIFAFEGLVSMD
Ga0214917_1000140146	F030060	N/A	MTKGIITSESPEIHWEHLKVAGGRVLDLGCAFWTEAERQEANGTTKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDTWLNEFIAWFDSIGFECYRHDSVSFCAEISVIYGRLKC
Ga0214917_1000140148	F003049	AGGA	MKNAKQIIGCRKSKKGESTKGLGMITFGKSSVDKTKYVLVDITYDDKAGKELYEAGMLALKHDPEAVIEYAIKKALTSMAKCKR
Ga0214917_100014018	F010463	N/A	MVLAATIHRVKMCEDKLREFEQMVTTLTATMAQNRAELVSQGLEKLVMGVTTPLDIPKELIPTRGKDGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSR