NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001230

Scaffold Ga0214917_10001230


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33137
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (73.58%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011143Metagenome / Metatranscriptome294Y
F018168Metagenome236Y
F020143Metagenome225N
F027846Metagenome / Metatranscriptome193N
F036148Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000123012F011143AGGTGGMHKIEIVKKDGKKITYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLVFGDDYINQYSDVDLVYDSKNG
Ga0214917_1000123014F020143AGGMLDISFGRTRSQRSLKAVYVENLDEIMKKMKETDPKLQKEFKRALVKEVRPVAKLAQSFVPHKPFPGWRDVNPTYPPAWGWANDTQHRGRSYEGNSRWRWSQSEVIKGIRVSQAKVKVQRQRLATFSVTAIAVVNKSVPGIIYELAGFGTTRSKGKTRRVSRNPNASESFINKLQSTSASAAHREKRLVYRAGYQLGEQVNDNLYTVLKKYLGKEFRG
Ga0214917_1000123020F018168N/AMKLDKKKKEILKSYLRSVAAASITTALALIADWNAEYAILAGALVAPLARYFDPQDDKFGINSK
Ga0214917_1000123024F036148N/AMTPKKPRKVAKRKRRTPRKADALNKLENHYITLNEMYRAAKAAGFSSDVAFWLITEPGSSLPDWVNPTTKPSEIIPRIDPTDDEDED
Ga0214917_1000123029F027846AGGLELVKYDKQSGAYVDENRKHFVKASLIRQHAKKSIGAKQVRGRLSAKMVEAYWLDKFKEVVKYEL
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