Scaffold Ga0214917_10001095

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001095
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35345
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001182	Metagenome	755	Y
F001424	Metagenome / Metatranscriptome	698	Y
F003407	Metagenome / Metatranscriptome	488	Y
F003662	Metagenome / Metatranscriptome	474	Y
F011843	Metagenome	286	Y
F015839	Metagenome / Metatranscriptome	251	Y
F074415	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000109517	F000166	AGG	MSNIPTPEDAAHFAQSVRKWQAILNLGDWRIEKGLKPAKNAMASVEFNEGARLATYRLGDFGAEKITKESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIETQEHRVVNLLEKLLIKDSHEWT
Ga0214917_1000109525	F074415	GGA	MPSRIPDGLTVAQTSRGIVITSDPAKVRIIDQGSEKDVGMALFGYAHDQAKGFDNVAVAMDRSGIPVAELAIKPGQERRAMRAASLLAPDTGSTNMMSRGDVVNTRLRGLLD
Ga0214917_1000109529	F003407	N/A	MTDKELPPAIDACLDLVNDLLHPEVYGHAIPTEVKARAFVVKTMLERLKARMETSTWPEA
Ga0214917_1000109530	F001182	GGAGG	MTTTPIYPDGLYRFDCTIEGVDLICFLEYSPEEKGSTDSYGAPYEPDLEEGMMLNNAYIAGTVVDIAHMILQGLVDHIEVAALEKYNDR
Ga0214917_1000109531	F015839	N/A	MKNTTFTASVASDLFNAGYSCDGHPFIAEQFYVVIENAAGKRFRHQATFNGTQQVICEETGDACFPDLRAEASAKADRLAARVNAALEAGKFISPTFWDEVDPAYGSDEYVDQGTEAKRLFAEKAAA
Ga0214917_1000109536	F001424	GGAGG	MGQEVRQLSTGYPQSDKWVEDERVFCHQCSKAVEVDMKQSMPAEQMERHRKVNSKPLQWMFDEAKIRNGWATITWSEHQCSQTGLAAFPTDVKHRCHLFQAKATAVESESWWLT
Ga0214917_1000109539	F003662	GGAG	MKSKLATVIFKGQEWVVIDTAEEKDGKVFCTLMSPDGTTVLHAWVDINQIVGII
Ga0214917_1000109540	F011843	GGA	MNTQMLIKVRQLFNVDYVPRSTNRHNQLQYIKAIRLLGDKWLIHKNNEVQKIPQ