Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10001083 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10001083 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35614
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (81.40%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

35614

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (81.40%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005476	Metagenome / Metatranscriptome	399	Y
F006894	Metagenome / Metatranscriptome	362	Y
F012428	Metagenome	280	Y
F017442	Metagenome	240	Y
F017592	Metagenome	239	Y
F051785	Metagenome	143	N
F065547	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000108314	F017592	AGGAG	MMDDGDYTEIDEIMHWMTIIVLFLMTIVFLAGIAGLMWAML
Ga0214917_1000108318	F051785	AGGAG	MIDYLEFYKTYIPPPPISTLEDAYVKHHRKYGDRFNAFYTQMPLWMKELFWYSFWKEHST
Ga0214917_1000108319	F065547	AGGA	MTQPNKQHIHERLGMSVEESLNRLIWFGQISHKYKEEFGETMNPKHLEAVLNATPPKEEN
Ga0214917_1000108321	F017442	AGGA	VSLENENASTTTPSKRKKKFKDINFYDPFTRVDPKLLEQMYRAAQREKLKQQPEALM
Ga0214917_100010833	F006894	AGGA	MKQVEDNKTTGKFTWNYRIVNLKSENGGDDWYCLTEVCYDMNDKPTGYSTPCLGSDSMEGMRNVWDMMGEAMVLPPMQEEDFK
Ga0214917_1000108339	F005476	GGA	MTLTIRSVETNYVQQVWPMVQPFIEEALDKGGDFPEWAAGYDASHVQSFLTSGQWLLLVAVDEENQIHGASTVSFINYPLHRVAFVTTIGGKLISSQDTFEQLKTLLKQRGATKIQGYGRDAIVRLWKRYNFEPRNTLVEVLI
Ga0214917_1000108342	F012428	N/A	MAMLQNRASPNIPQAPPQYDVAYMNALSNVIRLFFNTINTVQQLNLASLNLDLKTLPTDADLPNLRIGDVYRDTQDGVQATSQMLRIKVPVELTGVSGAGAVGSVGAVGGTITKNLTGVSGAGKVGTVTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10001083

Overview

Ecosystem & Geography

Associated Families

Sequences