Scaffold Ga0214917_10001070

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001070
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35774
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023293	Metagenome	210	Y
F032573	Metagenome	179	Y
F039032	Metagenome / Metatranscriptome	164	N
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100010701	F057197	AGGA	MANFETWQYDNLVKFAVEANKRLALLNAEIDALNADLKTAINAYRDLLRRDTLGFFEATHPTKTKQTGE
Ga0214917_100010703	F023293	GGA	MRYGILDDESNVVRWVWHMPPYPHIVQKIKRQRKPKLDLSNVPDALF
Ga0214917_100010704	F032573	AGG	MNKAEAWRKWWSVIQKTAPAGSYDPREAPMWDAWEAAWDVADKQSQIEITHLKEQLMRANTNDGAYKAAFLAGQMAARGGSWK
Ga0214917_1000107045	F039032	N/A	MVTLSEVDHKIDAHVDVCAVRYEGIEKETKGIHARIKRLEQILITGGGSIILLLLTILTRGH