Scaffold Ga0214917_10001018

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001018
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36758
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F051711	Metagenome	143	Y
F066596	Metagenome	126	Y
F094997	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000101825	F066596	AGGA	LVTPQAIENRLASLSKEVDDAHDFLEKAEHAYHKAKADYEIEMAHSRMKLSPEKMRVQDVQDYALIVCQEQYKALNQAEAVVKAARANSTRIRTQVDIARSIGTSVRASLEI
Ga0214917_100010185	F051711	AGG	MAYINQPPELRVLFADFDRRLRLLETATRFTFPNVTSDPSNPRKGDAWLNTTTNQAKIVDATGTVRILNWT
Ga0214917_1000101851	F002722	AGG	MAGRTGVRATLATFLTTPQIATLNQVFTSFPKRINFQVNSTAGQLSRAAVVVFIQSENETRLAIGGATNGWKRVDYSIILQIFHHSLQRNAEDAMTDFDTLVDNIKTRLRSDHRFGDSTGTLVWQGAEPIINATYGEPSTVAEGATETYAELQFDVTEMIQA
Ga0214917_1000101856	F094997	AGG	VIITNLKQVRQALEKAGANMDEGARNARDEMMLALIQLSKEEIKGRRPEGQKATSGIPPMNRSGNLRRSIRGEKFRKGFASYSAIVGPTIVYGRAVEIGGQWAPRSWKGTSAMAGFPYMKPAFIKFRTVAPAIIAKHIGQVVK