Scaffold Ga0214917_10000825

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000825
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40273
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (74.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F019314	Metagenome / Metatranscriptome	230	Y
F020162	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000082522	F000368	AGGAG	MDKKFKAMAATWFRAAASAAVALYLAGETDPKKLGTAALAGFLGPVLKWLDPKATEFGRGSKK
Ga0214917_1000082553	F020162	GGAGG	VDEDKDYVPRSITLADFLVVISGFAVNIVRAIEMLTSELLDLAVYNANRKTKVSKVWEQFTSDLEKMEDNNG
Ga0214917_1000082554	F019314	GGAGG	MKKGGREKAPMQQPTKGKMDTKKPKMADVKFGYAPAARKGKKA