Scaffold Ga0214917_10000821

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000821
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40343
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (32.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016772	Metagenome / Metatranscriptome	244	Y
F022820	Metagenome / Metatranscriptome	212	Y
F037078	Metagenome / Metatranscriptome	168	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100008211	F010817	AGGAG	LKRFASVLVLNFLLIGCATVTPDKIQDSNASYDASTPSQYNQDNGGVIALLENGAVITSQAKDRYNKLIEMYKVKFKKEKAIELVEGAGIKPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVP
Ga0214917_100008213	F016772	GGAG	MNKLNLIAVALMGIFMIGCSTTNTGGDNQIGGTTAVENALPYIKPATILICTVVLEQALSVEDRKEKAKMINHVSTIVESLTIGATPTPDQLQKALMDYLPAEKTHWAKYIVAVKDIYAAQFAKINGDAALAVKVLNAIAAGCKDATAEYVE
Ga0214917_1000082133	F080893	N/A	MKRTLKITNKNILEGEKANPQNCAIARAIKSKMRKEIEEVSVLPTQITLRIDNKMFVAPMPKEGTAFIKRFDRGLAVNPFELNLKFKKGYALV
Ga0214917_100008214	F009669	N/A	MKTMLSKIFGPNWRSSTSGIITVVAVATAFAIHGDNSLVAFLPDKAEEYIVGISKLIAVVSGIIFALTVKDAAVTGGKVAQTKEAKKRVKKEIGHGENI
Ga0214917_1000082141	F037078	N/A	MKNQITITTQPFGNTTAFLLEGDKKHIRTFHNAMYNYAATNGKLHDLGNGKAFYFYAQPEAVLQAMTKVALYALCNKIKAKGLKGGLLSLAKQKAQDKFDSFKEGRFLRTSISTDVFNLGSITAEKPSDYCGAISAGRD
Ga0214917_1000082154	F014486	N/A	MNIEKLLNENLESFYPWSDNDNPPLDAGKTFLQKEREIDEFFEGWRASM
Ga0214917_1000082161	F022820	N/A	MKHENRISKILEKRVLKDEDPKLISQIDKYLAELEVVFVKWAKAHPNWKESEE
Ga0214917_1000082164	F007359	N/A	MKHIKLYKQNLGAHWVIGIKGSKDRIEQFHNRVYNWGGTNGKLKWMSRDFAYFWITMEKLERCMFKYVMNSMSDKLGKKFRGSKGGLKEVVLNRVKNTISKIPTDFFVRTEQVEHTYSLGQVSAEKLDNDS