Scaffold Ga0214917_10000540

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000540
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49888
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (54.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F007265	Metagenome / Metatranscriptome	354	Y
F016639	Metagenome / Metatranscriptome	245	Y
F054003	Metagenome / Metatranscriptome	140	Y
F077050	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000054030	F016639	N/A	MSKSVILSLLAQGNNGNEILSILDTLAADHVSDFHYIESPMIESILGISNLHNIEF
Ga0214917_1000054032	F054003	N/A	MTDTLKEYHFTDEQIDFLMRIVRNNAQFEDGEDREFMEELANQIEDQIVNHPTNE
Ga0214917_1000054059	F004208	GGA	MTYELNQEAKAFSYTREELFECITKIVAHPHKNLTEHDKSRALAIMVVFDDYFSNYTESDNNGGYCVYERDATDFTDFVRLKLGIDDYDAVDVDEMLK
Ga0214917_1000054061	F007265	GAGG	MDAEHQMTFQPYNIVPGTEILHSLTDVYELCDEAEGMTYRVELNADNGGVYIKSSEKGHEEGSKNITEDMSIGNKQLAIVIAKRILELYGELK
Ga0214917_100005407	F077050	N/A	MAEFTVRVSSNKNYKVVSERTVVAQNLSDLADVSVPNLPQKDKYVLTYDATLQRYILVPADTVLQVAVDDSSLPPEFVTQLETDLDNQIDVDAGQF