Scaffold Ga0214917_10000401

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000401
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56730
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (41.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F025981	Metagenome	199	Y
F033783	Metagenome / Metatranscriptome	176	Y
F051081	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100004015	F051081	N/A	MNLQSQLDHYLTQWDMKQSTKRGYNPFALGIYLERAERLAKDVAQGATISDAIDEHFCDRLAAFLHKKFS
Ga0214917_1000040153	F033783	AGAAGG	MTDNDFPVRMAGQRLSLQPYKLAGLTPSDVTKRLRYQAANPSY
Ga0214917_1000040173	F025981	N/A	MNLKELIECLRSIDTSLQVIASTHSGNITTAFVNKKTMAARMSVPPVTIDKLIHQGLISGGASGLVEGKHYCKIDPTENNTNNFLFDAVKVMADAWNSFQ
Ga0214917_1000040181	F008401	GGA	MLTIAETAELLNCSAGFVRKRIALSESNLAGGWPKTIYVNLQPNGAKSLFRINKGALEEYLQTNETSPTIEEQTEVACAFRSV
Ga0214917_1000040185	F001215	AGGAG	MSSTSTNKQPCLIDRPFLRGGKINSATTTVNPSNPNFSDLVQLVRVGDLPSEDGAFVEDIFLVSNEFYPTNAGRRTAELGLYIYAPNQSAPATSAPLVITRAEFVLESGTAGLIQHFELPAVNAPVPAVGDATGLTRPIEIGKGEGLYLEKGYILCAGYIGAGRTAVSGGLSPSGLSLFAQGGFY